# Run.cns file is not in the run1 directory **URL:** \ **Category:** Uncategorized\ **Created:** [October 10, 2023, 4:53pm UTC](https://ask.bioexcel.eu/t/run-cns-file-is-not-in-the-run1-directory/4594 "2023-10-10T16:53:41Z")\ **Posts on this page:** 2\ **Page:** 1
**Author:** ![gaurav.sharmapsit](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/gaurav.sharmapsit/32/689_2.png) [@gaurav.sharmapsit](https://ask.bioexcel.eu/u/gaurav.sharmapsit)\ **Post date:** [October 10, 2023, 4:53pm UTC](https://ask.bioexcel.eu/t/run-cns-file-is-not-in-the-run1-directory/4594/1 "2023-10-10T16:53:41Z")
I am trying to run haddock but it is not creating thr run.cns file in the run1 directory. Instead, I am getting the error as shown below. runDir= ./run1 project . exists, run 1 does not exist create the new run 1 Traceback (most recent call last): File “/home/abwer/Downloads/haddock2.4-2022-01/Haddock/RunHaddock.py”, line 153, in new[‘CRYO-EM\_FILE’], File “/home/abwer/Downloads/haddock2.4-2022-01/Haddock/Main/Setup.py”, line 210, in SetupNewProject shutil.copy(filetocopy, runDir + ‘/tools’) File “/home/abwer/Downloads/amber20/amber20/miniconda/envs/py2/lib/python2.7/shutil.py”, line 133, in copy copyfile(src, dst) File “/home/abwer/Downloads/amber20/amber20/miniconda/envs/py2/lib/python2.7/shutil.py”, line 96, in copyfile with open(src, ‘rb’) as fsrc: IOError: [Errno 21] Is a directory: ‘/home/abwer/Downloads/haddock2.4-2022-01/tools/haddock-tools’ ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [October 11, 2023, 6:29am UTC](https://ask.bioexcel.eu/t/run-cns-file-is-not-in-the-run1-directory/4594/2 "2023-10-11T06:29:23Z")
Did you add the haddock-tools directory into the tools directory of your haddock installation? Remove that dir (move it outside haddock) and try again