# Reading LIST file generated in it1

**URL:** <https://ask.bioexcel.eu/t/reading-list-file-generated-in-it1/3627>\
**Category:** HADDOCK\
**Created:** [March 30, 2022, 9:54am UTC](https://ask.bioexcel.eu/t/reading-list-file-generated-in-it1/3627 "2022-03-30T09:54:22Z")\
**Posts on this page:** 4\
**Page:** 1

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**Author:** ![mitesh](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/mitesh/32/569_2.png) [@mitesh](https://ask.bioexcel.eu/u/mitesh)\
**Post date:** [March 30, 2022, 9:54am UTC](https://ask.bioexcel.eu/t/reading-list-file-generated-in-it1/3627/1 "2022-03-30T09:54:22Z")

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I have the LIST file for the docked structures named as complex\_HS\_irmsd\_lrmsd\_fnat. I am facing issues in interpreting the file as in which values belong to which structure in which cluster. Please help me to rectify the problem.

 ![imamge 1](https://europe1.discourse-cdn.com/flex013/uploads/bioexcel/original/1X/16634c04550f7048f42627f5c17821b095c43a60.png)

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**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [March 30, 2022, 10:12am UTC](https://ask.bioexcel.eu/t/reading-list-file-generated-in-it1/3627/2 "2022-03-30T10:12:36Z")

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The last column gives the cluster number (with 0 indicating it does not belong to a cluster).

But if you want to dive into the details, look rather into the `structures/it1/water` directory where you will find cluster specific files.

For the meaning of the various files refer to:

```
https://www.bonvinlab.org/software/haddock2.4/analysis/#cluster-based-analysis
```

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<div class="post-metadata">

**Author:** ![mitesh](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/mitesh/32/569_2.png) [@mitesh](https://ask.bioexcel.eu/u/mitesh)\
**Post date:** [March 30, 2022, 11:09am UTC](https://ask.bioexcel.eu/t/reading-list-file-generated-in-it1/3627/3 "2022-03-30T11:09:46Z")

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Thanks a lot for your reply. I am still confused about the files. I want to compare 3 different docked structures based on i-RMSD, L-RMSD and F-nat. As I mentioned earlier I got the files from the path you specified but I am not sure how to check the values for the best structures.  
Thanks in advance and sorry for the inconvenience.

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<div class="post-metadata">

**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [March 31, 2022, 9:22am UTC](https://ask.bioexcel.eu/t/reading-list-file-generated-in-it1/3627/4 "2022-03-31T09:22:22Z")

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Do you want to get those values with respect to some reference structure?

It that’s the case I would suggest to try to use DockQ