# Pmx protein-ligand tutorial

**URL:** <https://ask.bioexcel.eu/t/pmx-protein-ligand-tutorial/5349>\
**Category:** Uncategorized\
**Created:** [November 26, 2024, 3:10am UTC](https://ask.bioexcel.eu/t/pmx-protein-ligand-tutorial/5349 "2024-11-26T03:10:47Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![vnbalaji](https://avatars.discourse-cdn.com/v4/letter/v/3d9bf3/32.png) [@vnbalaji](https://ask.bioexcel.eu/u/vnbalaji)\
**Post date:** [November 26, 2024, 3:10am UTC](https://ask.bioexcel.eu/t/pmx-protein-ligand-tutorial/5349/1 "2024-11-26T03:10:47Z")

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The ligand structures are attached. The two structures geometrically looks same. Can I assume during computation using topology/connectivity information, appropriate ligand geometry will be used? Thanks for clarification.

 ![image](https://europe1.discourse-cdn.com/flex013/uploads/bioexcel/original/2X/5/555530504bc0768bee65012799d224fb5d5f6e94.png)