# Is the DNA design function of the server out of the question these days?

**URL:** <https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339>\
**Category:** HADDOCK\
**Created:** [April 5, 2017, 3:30am UTC](https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339 "2017-04-05T03:30:56Z")\
**Posts on this page:** 6\
**Page:** 1

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**Author:** ![Ni1](https://avatars.discourse-cdn.com/v4/letter/n/eb9ed0/32.png) [@Ni1](https://ask.bioexcel.eu/u/Ni1)\
**Post date:** [April 5, 2017, 3:30am UTC](https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339/1 "2017-04-05T03:30:56Z")

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I typed DNA as usual, but the site shows the following. Is the server out of the problem?

\<type ‘exceptions.IOError’\> Python 2.7.2: /usr/local/bin/python  
Wed Apr 5 05:29:05 2017  
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/home/enmr/services-enmr/3DDART/cgi/DARTcustombuild.py in ()  
214 #print “Content-Type: text/html\n”  
215 custom = DartCustomBuild()  
=\> 216 server = WebServer(DARTDIR,remote\_env=custom.createEnv()) # Send form to webserver  
217 filepath = server.RunDART(custom.python\_dict) # Run DART from in webserver mode  
218 custom.dartDownload(filepath) # Collect download path and present to user  
server undefined, WebServer = , DARTDIR = ‘/home/enmr/services-enmr/3DDART/server’, remote\_env undefined, custom = \< **main**.DartCustomBuild object\>, custom.createEnv = \<bound method DartCustomBuild.createEnv of \< **main**.DartCustomBuild object\>\>  
/home/enmr/services-enmr/3DDART/server/system/DARTserver.py in **init** (self=\<system.DARTserver.WebServer instance\>, DARTDIR=’/home/enmr/services-enmr/3DDART/server’, remote\_env=[‘HTTP\_USER\_AGENT: Mozilla/5.0 (Windows NT 10.0; W…me/49.0.2623.221 Safari/537.36 SE 2.X MetaSr 1.0\n’, ‘REMOTE\_ADDR: 218.199.207.95\n’, ‘REMOTE\_PORT: 62029\n’, ‘HTTP\_REFERER: [http://milou.science.uu.nl/services/3DDART/\n](http://milou.science.uu.nl/services/3DDART/%5Cn)’])  
45  
46 # Log webserver call to DARTserver.log  
=\> 47 log = open(self.DARTDIR+’/server-tmp/DARTserver.log’,‘a’)  
48 log.write("\* DART server call created on %s with job ID %s with data:\n" % (time.ctime(),self.jobid))  
49 for n in remote\_env:  
log undefined, builtin open = , self = \<system.DARTserver.WebServer instance\>, self.DARTDIR = ‘/home/enmr/services-enmr/3DDART/server’  
\<type ‘exceptions.IOError’\>: [Errno 13] Permission denied: ‘/home/enmr/services-enmr/3DDART/server/server-tmp/DARTserver.log’  
args = (13, ‘Permission denied’)  
errno = 13  
filename = ‘/home/enmr/services-enmr/3DDART/server/server-tmp/DARTserver.log’  
message = ‘’  
strerror = 'Permission denied

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**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [April 5, 2017, 8:27am UTC](https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339/2 "2017-04-05T08:27:07Z")

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We have had a hardware issue and this service is now running on another server, but there are still problems to be fixed. Be patient.

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**Author:** ![Ni1](https://avatars.discourse-cdn.com/v4/letter/n/eb9ed0/32.png) [@Ni1](https://ask.bioexcel.eu/u/Ni1)\
**Post date:** [April 6, 2017, 12:33pm UTC](https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339/3 "2017-04-06T12:33:44Z")

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Thank you for your reply. There is still a problem now. After the DNA design, there is no jobnr8-PDBeditor file. This file is important for our HADDOCK processing.

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**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [April 6, 2017, 1:27pm UTC](https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339/4 "2017-04-06T13:27:24Z")

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You are lucky you got so far since we are still trying to fix the server… 🙂  
So be patient.

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**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [April 7, 2017, 1:17pm UTC](https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339/5 "2017-04-07T13:17:36Z")

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Give it another try - I hope we have fixed all issues.  
Cheers  
Alexandre

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**Author:** ![Ni1](https://avatars.discourse-cdn.com/v4/letter/n/eb9ed0/32.png) [@Ni1](https://ask.bioexcel.eu/u/Ni1)\
**Post date:** [April 17, 2017, 3:12am UTC](https://ask.bioexcel.eu/t/is-the-dna-design-function-of-the-server-out-of-the-question-these-days/339/6 "2017-04-17T03:12:49Z")

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Thank you very much for your work