# Haddock run slower than usual

**URL:** <https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786>\
**Category:** HADDOCK\
**Created:** [January 3, 2020, 3:07am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786 "2020-01-03T03:07:44Z")\
**Posts on this page:** 11\
**Page:** 1

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**Author:** ![kin](https://avatars.discourse-cdn.com/v4/letter/k/b9e5f3/32.png) [@kin](https://ask.bioexcel.eu/u/kin)\
**Post date:** [January 3, 2020, 3:07am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/1 "2020-01-03T03:07:44Z")

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the haddock run that i previously did only take about 3-5 hours to complete, but it’s been one day and this particular run still hasn’t completed and it’s running slower than usual.

[http://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/TIIERGCGCPKVKPG\_EQCADRB100101\_5000\_200\_200\_norandom\_32HBond/](http://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/TIIERGCGCPKVKPG_EQCADRB100101_5000_200_200_norandom_32HBond/)

Is it system error, or server in busy mode?

Regards

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**Author:** ![honoratorv](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/honoratorv/32/672_2.png) [@honoratorv](https://ask.bioexcel.eu/u/honoratorv)\
**Post date:** [January 3, 2020, 8:53am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/2 "2020-01-03T08:53:02Z")

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There is no way of telling how long a run will take to run, it depends heavily on the input parameters and the availability of the computational resources.

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**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [January 3, 2020, 9:48am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/3 "2020-01-03T09:48:53Z")

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Your run now completed.

There seems to have been issues with the grid infrastructure yesterday that slowed down our jobs.  
Things seem back to normal.

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**Author:** ![kin](https://avatars.discourse-cdn.com/v4/letter/k/b9e5f3/32.png) [@kin](https://ask.bioexcel.eu/u/kin)\
**Post date:** [January 3, 2020, 10:22am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/4 "2020-01-03T10:22:39Z")

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noted, thanks for the prompty reply

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**Author:** ![kin](https://avatars.discourse-cdn.com/v4/letter/k/b9e5f3/32.png) [@kin](https://ask.bioexcel.eu/u/kin)\
**Post date:** [January 3, 2020, 10:23am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/5 "2020-01-03T10:23:01Z")

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yeah, i just checked. thanks for the update. cheers

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**Author:** ![kin](https://avatars.discourse-cdn.com/v4/letter/k/b9e5f3/32.png) [@kin](https://ask.bioexcel.eu/u/kin)\
**Post date:** [January 9, 2020, 2:17pm UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/6 "2020-01-09T14:17:35Z")

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[https://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/ITSKDCPNGHVCYTK\_EQCADRB100101\_5000\_200\_200\_norandom\_25HBond/](https://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/ITSKDCPNGHVCYTK_EQCADRB100101_5000_200_200_norandom_25HBond/)

[https://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/HVCYTKTWCDAFCSI\_EQCADRB100101\_5000\_200\_200\_norandom\_25HBond/](https://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/HVCYTKTWCDAFCSI_EQCADRB100101_5000_200_200_norandom_25HBond/)

Hi, i have two runs stucked at it0 99% for some times, please have a look and see if there’s system error. thanks

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**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [January 9, 2020, 2:46pm UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/7 "2020-01-09T14:46:57Z")

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Hi Kin

Probably grid-related issues that made your jobs stall.  
Should be proceeding again now.

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**Author:** ![kin](https://avatars.discourse-cdn.com/v4/letter/k/b9e5f3/32.png) [@kin](https://ask.bioexcel.eu/u/kin)\
**Post date:** [January 10, 2020, 1:13am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/8 "2020-01-10T01:13:10Z")

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noted, thanks alot. 🙏

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**Author:** ![kin](https://avatars.discourse-cdn.com/v4/letter/k/b9e5f3/32.png) [@kin](https://ask.bioexcel.eu/u/kin)\
**Post date:** [January 10, 2020, 3:40pm UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/9 "2020-01-10T15:40:46Z")

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Hi admin, i run into stalling issue again, please refer to below, thanks

[https://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/SIRGKRVDLGCAATC\_EQCADRB100101\_5000\_200\_200\_norandom\_25HBond/haddock.out](https://milou.science.uu.nl/serviceresults/HADDOCK2.2/6851440797/SIRGKRVDLGCAATC_EQCADRB100101_5000_200_200_norandom_25HBond/haddock.out)

this time it stucked at water stage 99%

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<div class="post-metadata">

**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\
**Post date:** [January 10, 2020, 3:58pm UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/10 "2020-01-10T15:58:52Z")

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All runs currently active started after midday today… which is still a very reasonable time considering jobs are sent to the grid.  
Be patient! And remember this is a free service.

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<div class="post-metadata">

**Author:** ![kin](https://avatars.discourse-cdn.com/v4/letter/k/b9e5f3/32.png) [@kin](https://ask.bioexcel.eu/u/kin)\
**Post date:** [January 11, 2020, 12:14am UTC](https://ask.bioexcel.eu/t/haddock-run-slower-than-usual/1786/11 "2020-01-11T00:14:14Z")

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noted, thanks for the prompt reply.
