# HADDOCK in Linux
**URL:** https://ask.bioexcel.eu/t/haddock-in-linux/585
**Category:** HADDOCK
**Created:** [November 1, 2017, 8:10am UTC](https://ask.bioexcel.eu/t/haddock-in-linux/585 "2017-11-01T08:10:08Z")
**Posts on this page:** 2
**Page:** 1
### Author:  [@Michaela\_Cernekova](https://ask.bioexcel.eu/u/Michaela_Cernekova)
#### Post date: [November 1, 2017, 8:10am UTC](https://ask.bioexcel.eu/t/haddock-in-linux/585/1 "2017-11-01T08:10:08Z")
Dear HADDOCK developers and users,
Here I am again. In our lab we have decided to start using HADDOCK in Linux for protein-protein {-ligand, -peptide} docking. Please, can I ask, if there are any tutorials for docking in linux for total beginners }I mean something like what file I should open and so…} ? I know that some tutorials are on webpage of bonvinlab/education, but for protein-protein it is without linux.
Thank you very much.
Michaela.
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### Author:  [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)
#### Post date: [November 1, 2017, 1:09pm UTC](https://ask.bioexcel.eu/t/haddock-in-linux/585/2 "2017-11-01T13:09:13Z")
Hi Michaela
Refer to the following chapters in Methods in Molecular Biology:
J.P.G.L.M Rodrigues, E. Karaca and A.M.J.J. Bonvin. Information-driven structural modelling of protein-protein interactions. Methods in Molecular Biology: Molecular Modelling of Proteins. Ed. Andreas Kokul. Humana Press Inc. 399-424 (2015).
> **[Information-Driven Structural Modelling of Protein–Protein Interactions](https://link.springer.com/protocol/10.1007/978-1-4939-1465-4_18)**
>
> Protein–protein docking aims at predicting the three-dimensional structure of a protein complex starting from the free forms of the individual partners. As assessed in the CAPRI community-wide...
C. Geng, S. Narasimhan, J. P.G.L.M. Rodrigues and A.M.J.J. Bonvin. Information-driven, ensemble flexible peptide docking using HADDOCK. Methods in Molecular Biology: Modeling Peptide-Protein Interactions. Eds Ora Schueler-Furman and Nir London. Humana Press Inc. 1561, 109-138 (2017).
> **[Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK](https://link.springer.com/protocol/10.1007%2F978-1-4939-6798-8_8)**
>
> Modeling protein-peptide interactions remains a significant challenge for docking programs due to the inherent highly flexible nature of peptides, which often adopt different conformations whether in...
And also: [http://www.bonvinlab.org/software/haddock2.2/tut\_e2a-hpr-csp/](http://www.bonvinlab.org/software/haddock2.2/tut_e2a-hpr-csp/)