# Bin error when try to execute the source ./haddock.config **URL:** \ **Category:** HADDOCK\ **Created:** [July 9, 2021, 2:09pm UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156 "2021-07-09T14:09:39Z")\ **Posts on this page:** 20\ **Page:** 1
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 9, 2021, 2:09pm UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/1 "2021-07-09T14:09:39Z")
we have compiled the cns\_solve and also configured haddock2.4 but after compilation, we couldn’t execute the haddock program when we execute it shows no nacces in /gromacs/bin: openmpi/bin: and so on for all other already installed software and their bin followed by a colon. please help me to fix this issue ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 9, 2021, 6:25pm UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/2 "2021-07-09T18:25:22Z")
Are you following the instructions from: ``` https://www.bonvinlab.org/education/HADDOCK24/HADDOCK24-local-tutorial/ ``` The message only tells that it can not find naccess, which is anyway not an issue. You should be able to use the software fine. If you want to get rid of the error simply comment out the line containing `which naccess` in `haddock_configure.sh/csh` But this will not prevent you to use further haddock ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 10, 2021, 7:39am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/3 "2021-07-10T07:39:36Z")
when I try to execute ./haddock\_configure.sh it gives me following error source ./haddock\_configure.sh /usr/bin/which: no naccess in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no pales in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no profit in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no tensor2 in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) when I remove the which naccess from the haddock\_configure.sh it gives me /usr/bin/which: no pales in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no profit in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no tensor2 in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) after I removed which no pales from the .sh file it gives me /usr/bin/which: no profit in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no tensor2 in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/root/bin:/root/software/pdb-tools:/root/software/freesasa-2.0.3/src) And finally i remove profit and tensor2 lines as well and there is no output and the software doesnt launch as well. But I followed all the steps correctly I am using 32 core centos system Contents of my conf.local file is set CNSTMP=/root/software/cns\_solve\_1.3/intel-x86\_64bit-linux/source/cns\_solve-2107101242.exe set QUEUETMP=/bin/csh set NUMJOB=32 set QUEUESUB=QueueSubmit\_concat.py Thanks ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 10, 2021, 8:30am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/4 "2021-07-10T08:30:35Z")
You can still use haddock… Comment out the other lines But again haddock is perfectly fine even if you get those messages. This command only defines some environment variable and path and does not start haddock ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 12, 2021, 7:21am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/5 "2021-07-12T07:21:06Z")
I just removed all those lines but when I try to execute source ./haddock\_configure.sh it did not give any output/did not open the program as well ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 12, 2021, 8:49am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/6 "2021-07-12T08:49:15Z")
Which is normal… Did you read the tutorial??? ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 12, 2021, 9:48am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/7 "2021-07-12T09:48:36Z")
I have go through the tutorial and I followed all the steps in the installation instructions as well. I did not get any error massage while installing but still I am unable to launch the software ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 12, 2021, 10:01am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/8 "2021-07-12T10:01:48Z")
Follow the entire tutorial describing all the steps to setup and launch a run… There is no graphical interface. > **[Tutorial describing the use of a local version of HADDOCK2.4](https://www.bonvinlab.org/education/HADDOCK24/HADDOCK24-local-tutorial/#setting-up-the-docking)** > > A tutorial describing the use a local version HADDOCK2.4 ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 12, 2021, 12:31pm UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/9 "2021-07-12T12:31:51Z")
I have followed the instructions as given. I have copied the example files and the .param files to the directory where I have all my input structure but when I typed haddock2.4 it gives back me with a error bash: haddock2.4: command not found… ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 12, 2021, 12:51pm UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/10 "2021-07-12T12:51:48Z")
Which means your configuration is either wrong, or you did not source first the haddock\_configure.sh script ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 12, 2021, 1:30pm UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/11 "2021-07-12T13:30:57Z")
That is what my actual and first query is. when I try source haddock\_configure.sh it gives me the follwing error source haddock\_configure.sh /usr/bin/which: no naccess in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/kmpr/.local/bin:/home/kmpr/bin:/root/software/bin:/root/software/bin:/root/software/haddock-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no pales in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/kmpr/.local/bin:/home/kmpr/bin:/root/software/bin:/root/software/bin:/root/software/haddock-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no profit in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/kmpr/.local/bin:/home/kmpr/bin:/root/software/bin:/root/software/bin:/root/software/haddock-tools:/root/software/freesasa-2.0.3/src) /usr/bin/which: no tensor2 in (/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/home/kmpr/softwares/pymol/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/data/apps/gromacs-2019.1/bin:/data/apps/cmake-3.14.3/bin:/data/apps/openmpi-4.0.0/bin:/usr/local/cuda-10.1/bin:/opt/BiO/gridengine/bin:/opt/BiO/gridengine/bin/lx-amd64:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/kmpr/.local/bin:/home/kmpr/bin:/root/software/bin:/root/software/bin:/root/software/haddock-tools:/root/software/freesasa-2.0.3/src) And when I removed the lines from config.sh file it gives me this. [https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/4?u=wmunees47](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/4) But you told me that, this is not an issue for running the haddock and finally I end up with [this](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/9) ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 12, 2021, 2:59pm UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/12 "2021-07-12T14:59:43Z")
What is the current content of your `haddock_configure.sh` file? Again, most users don’t have those issues… Did you follow step-by-step all installation instructions? ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 13, 2021, 5:16am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/13 "2021-07-13T05:16:10Z")
#!/bin/bash # # HADDOCK configuration file # HADDOCK=“/root/software/haddock2.4-2021-05” HADDOCKTOOLS=“$HADDOCK/tools” PYTHONPATH=“${PYTHONPATH}:$HADDOCK” alias haddock2.4=“$(which python) $HADDOCK/Haddock/RunHaddock.py” #alias haddock2.4=“/home/enmr/software/python/bin/python $HADDOCK/Haddock/RunHaddock.py” # # Define location of third party software # NACCESS=`which naccess` PALES=`which pales` PROFIT=`which profit` TENSOR2=`which tensor2` export HADDOCK HADDOCKTOOLS PYTHONPATH NACCESS PALES PROFIT TENSOR2 And the content of my conf.local file is set CNSTMP=/root/software/cns\_solve\_1.3/intel-x86\_64bit-linux/source/cns\_solve-2107101242.exe set QUEUETMP=/bin/csh set NUMJOB=32 set QUEUESUB=QueueSubmit\_concat.py ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 13, 2021, 6:50am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/14 "2021-07-13T06:50:07Z")
Looks correct to me. You should however make sure that you are using python2.7 with haddock. Also after you have sourced the haddock-configure.sh script, check if the haddock2.4 alias is properly defined. It should. Type `alias` to check all defined aliases ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 13, 2021, 10:08am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/15 "2021-07-13T10:08:21Z")
alias alias cp=‘cp -i’ alias egrep=‘egrep --color=auto’ alias fgrep=‘fgrep --color=auto’ alias grep=‘grep --color=auto’ alias l.=‘ls -d .\* --color=auto’ alias licstart=’$SCHRODINGER/licadmin start’ alias licstat=’$SCHRODINGER/licadmin stat’ alias ll=‘ls -l --color=auto’ alias ls=‘ls --color=auto’ alias maestro=’$SCHRODINGER/maestro’ alias mv=‘mv -i’ alias pycharm=’/data/apps/pycharm-community-2019.3.3/bin/pycharm.sh’ alias rm=‘rm -i’ alias which=‘alias | /usr/bin/which --tty-only --read-alias --show-dot --show-tilde’ ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 13, 2021, 10:10am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/16 "2021-07-13T10:10:17Z")
please tell me how to give input to haddock in bashrc? ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 13, 2021, 10:37am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/17 "2021-07-13T10:37:37Z")
And this is after sourcing the `haddock_configure.sh` script in the same terminal window??? ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 13, 2021, 10:55am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/18 "2021-07-13T10:55:43Z")
Yes it is after sourcing the haddock\_configure.sh ---
**Author:** ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)\ **Post date:** [July 13, 2021, 11:09am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/19 "2021-07-13T11:09:14Z")
Can’t be… a haddock2.4 alias should have been defined… Try typing all commands defined in haddock\_configure.sh manually in the terminal window. Make sure that the `which python` command is working and pointing to a python2.7 installation. If not define the exact path to python2.7 ---
**Author:** ![wmunees47](https://avatars.discourse-cdn.com/v4/letter/w/aeb1de/32.png) [@wmunees47](https://ask.bioexcel.eu/u/wmunees47)\ **Post date:** [July 14, 2021, 11:18am UTC](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/20 "2021-07-14T11:18:02Z")
when I try to execute which python it gives me /usr/bin/python and which python2.7 gives me /usr/bin/python2.7 I try to execute all the commands from terminal but it doesnt included in bashrc file. Next I try to insert those files in bashrc file itself The commands I included in bashrc is ################HADDOCK###### export HADDOCK=/root/software/haddock2.4-2021-05 export HADDOCKTOOLS=$HADDOCK/tools export PYTHONPATH="/usr/bin/python2.7 alias haddock2.4="$(which python2.7) $HADDOCK/Haddock/RunHaddock.py ############################## But it gives me bash: alias: python2.7: not found bash: alias: :/root/software/haddock2.4-2021-05: not found Please help me sortout this issue For your kind information the contents of my haddock\_conf.sh is [here](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156/13) [Next page](https://ask.bioexcel.eu/t/bin-error-when-try-to-execute-the-source-haddock-config/3156.md?page=2)