# Assistance Required: Restarting HADDOCK 2.5 Task After System Reboot

**URL:** https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160
**Category:** Uncategorized
**Created:** [June 25, 2024, 1:14pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160 "2024-06-25T13:14:23Z")
**Posts on this page:** 8
**Page:** 1

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### Author: ![zhuyaojun](https://avatars.discourse-cdn.com/v4/letter/z/f9ae1b/32.png) [@zhuyaojun](https://ask.bioexcel.eu/u/zhuyaojun)
#### Post date: [June 25, 2024, 1:14pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/1 "2024-06-25T13:14:24Z")

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Dear HADDOCK Support Team,

I hope this message finds you well.

I am writing to seek your assistance regarding an issue I encountered with my HADDOCK 2.5 task. Unfortunately, my computer was rebooted, causing the task to be interrupted. Now that my computer is back on, I am unsure of the steps needed to properly restart the HADDOCK task from where it left off.

Here are the details of my setup:

HADDOCK version: 2.5 - March 2024  
Project Directory: /home/zhu/download/haddock2.5-2024-03/TLR2-M/run1  
Operating System: Ubuntu (via WSL on Windows 11)  
I would greatly appreciate it if you could provide guidance on how to safely and effectively restart the interrupted task, ensuring that no previous progress is lost. If there are any specific logs or files you need from my end to facilitate this process, please let me know.

Thank you very much for your time and assistance. I look forward to your response.

Best regards,

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### Author: ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)
#### Post date: [June 25, 2024, 1:27pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/2 "2024-06-25T13:27:54Z")

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Simply go into the run1 folder.

Run: ./tools/haddock-clean

And then restart haddock2.5 in that folder. It will continue from where it is.

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### Author: ![zhuyaojun](https://avatars.discourse-cdn.com/v4/letter/z/f9ae1b/32.png) [@zhuyaojun](https://ask.bioexcel.eu/u/zhuyaojun)
#### Post date: [June 25, 2024, 1:58pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/3 "2024-06-25T13:58:19Z")

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![image](https://europe1.discourse-cdn.com/flex013/uploads/bioexcel/original/2X/f/fdc6960a82e08cb3c1aaf24f1a2e9f2f3e3c7f4e.png)  
How to solve this problem？  
Thank you very much

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### Author: ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)
#### Post date: [June 25, 2024, 2:19pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/4 "2024-06-25T14:19:16Z")

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Use the same command you used to start the run initially.

Did you first source the haddock\_configure script?

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<div class="post-metadata">

### Author: ![zhuyaojun](https://avatars.discourse-cdn.com/v4/letter/z/f9ae1b/32.png) [@zhuyaojun](https://ask.bioexcel.eu/u/zhuyaojun)
#### Post date: [June 25, 2024, 2:23pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/5 "2024-06-25T14:23:42Z")

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![image](https://europe1.discourse-cdn.com/flex013/uploads/bioexcel/original/2X/d/d8b628576f893d3ad41cd65ba5f698e258eb865f.png)  
Using the same command, the second run is still the same, I have a haddock\_configure.sh. 🙏 🙏 🙏

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<div class="post-metadata">

### Author: ![zhuyaojun](https://avatars.discourse-cdn.com/v4/letter/z/f9ae1b/32.png) [@zhuyaojun](https://ask.bioexcel.eu/u/zhuyaojun)
#### Post date: [June 25, 2024, 2:34pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/6 "2024-06-25T14:34:27Z")

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![image](https://europe1.discourse-cdn.com/flex013/uploads/bioexcel/original/2X/1/1e25be46a7495784593d606011e50bd64a08926e.png)  
 ![image](https://europe1.discourse-cdn.com/flex013/uploads/bioexcel/original/2X/d/d38982bf3fb722380cc8a92d7e484c398048a1b7.png)

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<div class="post-metadata">

### Author: ![zhuyaojun](https://avatars.discourse-cdn.com/v4/letter/z/f9ae1b/32.png) [@zhuyaojun](https://ask.bioexcel.eu/u/zhuyaojun)
#### Post date: [June 25, 2024, 3:07pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/7 "2024-06-25T15:07:56Z")

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![image](https://europe1.discourse-cdn.com/flex013/uploads/bioexcel/original/2X/f/f8d2cf362ce93bf6a3d197c5a8b81c13a866146a.png)

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<div class="post-metadata">

### Author: ![amjjbonvin](https://dub1.discourse-cdn.com/flex013/user_avatar/ask.bioexcel.eu/amjjbonvin/32/23_2.png) [@amjjbonvin](https://ask.bioexcel.eu/u/amjjbonvin)
#### Post date: [June 25, 2024, 8:43pm UTC](https://ask.bioexcel.eu/t/assistance-required-restarting-haddock-2-5-task-after-system-reboot/5160/8 "2024-06-25T20:43:57Z")

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How did you manage to run it in first instance ??