# Categories

[Latest](https://ask.bioexcel.eu/latest.md) · [Categories](https://ask.bioexcel.eu/categories.md) · [Tags](https://ask.bioexcel.eu/tags.md)

## [BioExcel  Feedback](https://ask.bioexcel.eu/c/bioexcel-feedback/66.md)

Welcome to BioExcel feedback category. Here you can provide feedback on future development of our core softwares (GROMACS,HADDOCK,BioBB and PMX) and on BioExcel activities.

## [BioExcel Webinar](https://ask.bioexcel.eu/c/bioexcel-webinar/56.md)

Here you ask questions to the BioExcel Webinar speakers. After each BioExcel Webinar, you can discuss the webinar topic with speaker for one week.

## [HADDOCK](https://ask.bioexcel.eu/c/haddock/6.md)

The HADDOCK category is meant for discussing any topic related to the use of the HADDOCK software, either as a local installation or via the HADDOCK web portal. For details about HADDOCK please ref...

## [BioBB](https://ask.bioexcel.eu/c/bioexcel-building-blocks-library/23.md)

BioBB is a software library for interoperable biomolecular simulation workflows.

## [pmx](https://ask.bioexcel.eu/c/pmx/12.md)

Automated protein structure and topology generation for alchemical perturbations. Web-server, source code, and examples at pmx.mpibpc.mpg.de/ .

## [GROMACS](https://ask.bioexcel.eu/c/gromacs/5.md)

Find the GROMACS forum at http://gromacs.bioexcel.eu

## [SPOTON](https://ask.bioexcel.eu/c/spoton/18.md)

This is the forum for the SpotOn web portalwhich implements a robust algorithm developed to identify and classify the interfacial residues as Hot-Spots (HS) and Null-Spots (NS).

## [PDB-tools](https://ask.bioexcel.eu/c/pdb-tools/24.md)

This is the forum for the PBD-tools web portal that allows to define workflows to manipulate PDB files and is designed to be a swiss-knife for the PDB format.

## [MDWeb](https://ask.bioexcel.eu/c/mdweb/11.md)

MDWeb - Molecular dynamics on the web provides a web interface to set up molecular dynamics simulations at https://mmb.irbbarcelona.org/MDWeb/

## [Workflows](https://ask.bioexcel.eu/c/workflows-ig/15.md)

This category is for all discussions related to the Workflows Interest Group. Its primary audience is members of the IG but this forum is open for anyone to contribute.

## [QM/MM for Biomolecular Simulation](https://ask.bioexcel.eu/c/qmmm-biosim/20.md)

Challenges combining quantum mechanics and molecular mechanics using CP2K and GROMACS

## [DISVIS](https://ask.bioexcel.eu/c/disvis/13.md)

This is the help forum for DISVIS, a software and web portal that allows you to visualizes and quantify the information content of distance restraints between macromolecular complexes

## [General Topics in Molecular Dynamics](https://ask.bioexcel.eu/c/general-topics-in-molecular-dynamics/19.md)

General musings about molecular dynamics that do not relate directly to GROMACS, HADDOCK or CPMD

## [POWERFIT](https://ask.bioexcel.eu/c/powerfit/14.md)

This is the help forum for POWERFIT, a software and web portal that allows you to automatically fits high-resolution atomic structures in cryo-EM densities.

## [Uncategorized](https://ask.bioexcel.eu/c/uncategorized/1.md)

## [Site Feedback](https://ask.bioexcel.eu/c/site-feedback/3.md)

Discussion about this site, its organization, how it works, and how we can improve it.

## [PRODIGY](https://ask.bioexcel.eu/c/prodigy/17.md)

This is the forum for the PRODIGY web portal ( that predicts binding affinities for protein-protein (PRODIGY) and protein-small ligand (PRODIGY-LIG) complexes and also allows to classify an interfa...