Oscillational period warning during tripeptide A2I forward simulation
|
|
14
|
502
|
January 31, 2023
|
Problem in using gentop
|
|
12
|
236
|
January 20, 2023
|
List index out of range when running pmx gentop
|
|
2
|
218
|
December 29, 2022
|
Bonds that rotated more than 30 degrees:
|
|
1
|
273
|
November 3, 2022
|
IndexError: list index out of range while preparing pdb file
|
|
1
|
363
|
September 15, 2022
|
Ligand topolgies for pmx
|
|
5
|
433
|
September 1, 2022
|
Pmx RBFE gives oddly large deltaG
|
|
1
|
294
|
August 14, 2022
|
PMX engineered resiude
|
|
4
|
248
|
July 18, 2022
|
Pmx ABFE ligand only simulation set-up
|
|
3
|
373
|
July 18, 2022
|
Using pmx genlib and hybrid topologies
|
|
3
|
431
|
July 11, 2022
|
PMX generating protein ligand simulation system with Charmm/cgenff forcefields
|
|
1
|
385
|
June 14, 2022
|
Free energy calculations error
|
|
1
|
1247
|
June 14, 2022
|
Free Energy Calculation: State B has non-zero total charge: -1.000000
|
|
1
|
337
|
June 14, 2022
|
Free energy calculation with double system/single box simulation
|
|
12
|
457
|
March 30, 2022
|
Error with Zn atom
|
|
3
|
360
|
March 29, 2022
|
Problem with SS bridges - Bug?
|
|
3
|
291
|
March 24, 2022
|
Peptide Nucleic Acid Functionality
|
|
2
|
384
|
January 2, 2022
|
Pmx - problems reproducing benchmarking from de Groot 2020
|
|
2
|
555
|
October 17, 2021
|
Itp ligand file generation
|
|
3
|
901
|
October 14, 2021
|
A non-finite potential energy in non-equilibrium transition with pmx
|
|
2
|
422
|
October 1, 2021
|
Alchemical free energy calculations
|
|
1
|
419
|
October 1, 2021
|
LINCS error during Alchemical free energy calculation
|
|
1
|
479
|
September 30, 2021
|
Energy minimization of hybrid ligand
|
|
2
|
517
|
November 13, 2020
|
Relative constraint deviation after LINCS
|
|
6
|
1925
|
October 9, 2020
|
Dual Topology Generator for Alchemical Pathways
|
|
1
|
764
|
October 9, 2020
|
Installed - can't import _pmx as _p
|
|
3
|
940
|
July 4, 2020
|
Follow-Up from Webinar: Mutation free energy calculations with pmx
|
|
0
|
1471
|
June 10, 2016
|