I was able to run Haddock2.2 locally following the web tutorial (but using my system as input), previously I edited run.cns in haddock web server, and then run in a linux terminal: haddock2.2
After 18 hs of work the script had stopped writing in the terminal and there was no evidence of cpu work, but it did not gave me the shell prompt back, so I supposed that It has not finished. Anyway I stopped it manually because I did not know what to do.
I found inside run1 directory: the structures of it0 and it1, with some analysis done, but not the backbone rmsd matrix calculations. So, I could obtain and see the ene_rmsd.xmgr, but not the next analysis described in:
1) Is it possible to run rmsd.inp after I stopped Haddock2.2 run?
2) Suppose that Haddock run is stopped before it has finished (for example, due to a power cut, which is quite common in our city). Is it possible to re-run the haddock without loosing what it is already done?
Thank you very much in advance!!