Well, i run a protein-protein docking some days ago.
- Trimmer structure (375 amino acid long )
- Monomer structure (86 amino acid long)
The problem begin when i decide to analyze the results of the docking. In all the cluster generated the first structure (trimmeric one) was modified and doesnt have any concordance with the original structure or any structure of a protein cause the tertiary structure looks broken, with lot of amino acid unlinked.
I used the easy interface for docking, and set all the residues of both proteins like “active residues”.
This its the link of my job : http://milou.science.uu.nl/serviceresults/HADDOCK2.2/7904636898/TRIMEROPRUEBA2/
I would very thankfull if someone could help me with this error, cause I cant elucidate it.