To which output files to do you refer?
And did you follow the instructions to properly define the PCS restraints? E.g.
Here is an example run with PCS restraints (you can download the full tar archive):
To know if you restraints were successfully read, you should download the full run and look in the run directory into the various out files (e.g. the one from it0) and search for error messages. The section reading the restraints will have the following string:
And in the analysis directory
structures/it1/water/analysis you should find a
xpcs.disp file that lists the number of violations per complex