Dear HADDOCk user,
I would like to dock 6 molecules.
For this I have to use the multibody docking interface.
I used to dock earlier just two proteins, where the option of specification of active sites (which I defined by CPORT) was given.
I have experimental results from cross-linking. These I usually fed in as TBL file as unambigous restraints.
Is this a problem if the active sites are not defined the ambigous ones.
I appreciate every comment very much