Thank you very much for your help. Is it, however also possible to enter other parameters? ...Like certain residue data from homologous models?!
My problem is that if I enter the two pdb files and the residues that directly interact, HADDOCK turns the two structures so much that somehow then the fit, even though i doubt that I can rely on that data because the bind to each other in a totally different angle than homologous complexes then. Therefore I would also like to enter important aspects of other homologous complexes!!!
Thank you very much,