I already create the AcrB_contacts.pdb according to small molecule binding site tutorial using cygwin under tcsh shell, and when i trying to encode contacts into the b-factor column of PDB file using the following command:
$WDIR/encode-contacts.csh structures/it0/Acontacts.lis AcrB_contacts.pdb
i encounter the following error:
/ana_script/zone_b command not found.
However, when i checked the program zone_b F file is in the ana_scripts directory.
Would appreciate if anyone could reply and explain to me how to solve this. Thank you.